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News
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[Sep. 2024] SeRTS accepted by EMNLP 2024.
[Sep. 2024] Oral Presentation at the BioASQ workshop of CLEF 2024.
[Jun. 2024] Started visiting at EMBL-EBI and University of Cambridge.
[Jun. 2024] One paper accepted by BioASQ workshop of CLEF 2024.
[Apr. 2024] Won the Silver Poster Award at Advancing Health with AI by Nature Conferences.
[Feb. 2024] ProNet DB was accepted by Database.
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Education |
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Publications (*equal contribution, #corresponding)
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9.
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Enhancing Biomedical Knowledge Retrieval-Augmented Generation
with Self-Rewarding Tree Search and Proximal Policy Optimization
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Minda Hu*, Licheng Zong*, Hongru Wang,
Jingyan Zhou, Jingjing Li, Yichen Gao, Kam-Fai Wong, Yu Li, Irwin King
Findings of The 2024 Conference on Empirical Methods in Natural Language Processing (EMNLP), 2024
[Paper]
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8.
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Enhancing Biomedical Question Answering with Parameter-Efficient Fine-Tuning and
Hierarchical Retrieval Augmented Generation
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Yichen Gao*, Licheng Zong*, Yu Li#
BioASQ Workshop of the Conference and Labs of the Evaluation Forum (CLEF), 2024
[Paper]
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7.
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ProNet DB: A proteome-wise database for protein
surface property representations and RNA-binding profiles
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Junkang Wei*, Siyuan Chen*, Jin Xiao*,
Licheng Zong, Xin Gao#, Yu Li#
Database: The Journal of Biological Databases and Curation, 2024
[Paper] |
[Web Server] |
[BIB]
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6.
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AcrNET: Predicting Anti-CRISPR with Deep Learning
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Yunxiang Li*, Yumeng Wei*, Sheng Xu, Qingxiong Tan,
Licheng Zong,
Jiuming Wang, Yixuan Wang, Jiayang Chen, Liang Hong, Yu Li#
Bioinformatics, 2023
[Paper] |
[Codes] |
[Web Server] |
[BIB]
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5.
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Interpretable RNA Foundation Model from Unannotated Data
for Highly Accurate RNA Structure and Function Predictions
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Jiayang Chen*, Zhihang Hu, Siqi Sun*#,
Qingxiong Tan, Yixuan Wang, Qinze Yu,
Licheng Zong, Liang Hong, Jin Xiao, Tao Shen,
Irwin King, Yu Li#
ICML Workshop on Computational Biology, 2022
[Paper] |
[Codes] |
[Web Server] |
[BIB]
Covered by [Synced (机器之心, in Chinese)]
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4.
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Self-supervised contrastive learning for integrative single cell RNA-seq data analysis
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Wenkai Han*, Yuqi Cheng*, Jiayang Chen*, Huawen Zhong, Zhihang Hu, Siyuan Chen,
Licheng Zong,
Liang Hong, Ting Fung Chan, Irwin King, Xin Gao#, Yu Li#
Briefings in Bioinformatics, Volume 23, Issue 5, Sep 2022
[Paper] |
[Codes] |
[BIB]
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3.
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Protein-RNA interaction prediction with deep learning: Structure matters
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Junkang Wei*, Siyuan Chen*,
Licheng Zong*, Xin Gao#, Yu Li#
Briefings in Bioinformatics, Volume 23, Issue 1, Jan 2022
[Paper] |
[BIB]
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2.
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HMD-AMP: Protein Language-Powered Hierarchical Multi-label Deep Forest for Annotating Antimicrobial Peptides
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Qinze Yu, Zhihang Dong, Xingyu Fan, Licheng Zong, Yu Li#
arXiv Preprint, 2021
[Paper] |
[BIB]
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1.
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Model Adaption Object Detection System for Robot
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Jingwen Fu, Licheng Zong, Yinbing Li, Ke Li, Bingqian Yang, Xibei Liu
39th Chinese Control Conference (CCC), 2020
[Paper] |
[BIB]
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Teaching
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Honors and Awards
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Full Postgraduate Studentship | The Chinese Univeristy of Hong Kong
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2021
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Excellent Graduate | Xi'an Jiaotong University
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2021
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Excellent Student | Xi'an Jiaotong University
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2018, 2019, 2020
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First Prize | National College Robot Competition (ROBOCON)
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2019
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Meritorious Winner | MCM/ICM Contest in Modeling
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2019
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